Modern solid state batteries are not suited to old motorcycle charging systems, so your choice of battery is a big problem, Li-ion battery can not tolerate over-voltage or permanent damage results. Your original charging system was designed for a lead acid battery that is very tolerant of over-voltage, basically because it is liquid cooled. Manufacturers designed the charging system around that wet cell battery, not a Li-ion battery type that didn't even exist when your motorcycle was built.
Power generation starts at the alternator coils and magnets so that's the first place to start testing and then work down stream to the rectifier and regulator. The output from the rectifier and regulator needs to be compatible with your fancy expensive battery or else you need to go back to stock everything.
You don't need to guess with electrics because you can test every part if you have the proper equipment. ... except that Li-ion battery, if the battery has been damaged internally there is no test for that, it will just have a shorter life expectancy until it finally melts down, catches fire or just quits working.
Power generation starts at the alternator coils and magnets so that's the first place to start testing and then work down stream to the rectifier and regulator. The output from the rectifier and regulator needs to be compatible with your fancy expensive battery or else you need to go back to stock everything.
You don't need to guess with electrics because you can test every part if you have the proper equipment. ... except that Li-ion battery, if the battery has been damaged internally there is no test for that, it will just have a shorter life expectancy until it finally melts down, catches fire or just quits working.