I don’t see where you got that. The charging circuit you posted has a 6 pin and 4 pin connector. Not a 5 pin. But I see no 5 pin connector anywhere, so I don’t know how you jumped to that conclusion.
...
Where did I get 5 pin connector from -> his first post:
Need help on wiring ... it has 4 pins adjacent to a 5 pin ...
8Ball you see no 5 pin connector anywhere? -> then you are not looking at the wires coming out of the alternator in the diagram I posted. There are 5 wires required in the alternator connector and that part is also indicated as a 6 P connector on the drawing.
If the "wiring ... it" has a 5 pin connector logically that would be connected to the alternator which requires 5 wire connections, the 'spark unit' didn't grow and extra connection, that component is faithfully shown with 4 wires in and 4 wires out on both engine spark units.
Why should the spark unit interchange:
His original engine has 2 pulse generators the donor has 2 pulse generators.
His original engine pulse generators (2) are in turn connected to 2 ignition coils that are in turn connected to a pair of spark plugs (2) that fire simultaneously. By the schematics I sourced, the donor circuit is identical (save for the notation errors in the drawing where they tagged the 6P connector as 4P and the 4P connector as 6P)
So we have the same number of spark plugs(4), firing by a 'spark unit' that is shown in both schematics to be the same. Plus I advised he research the resistance load on the ignition coils in the service manuals to make sure those are the same in both the donor and original coils. Same output parameters would imply the same power requirements from the 2 spark units. ... So ya, I think it's a pretty safe conclusion based on the schematics I sourced, and the OP's sketchy description of what is in front of him, the ignition system "spark unit" should interchange.
Lastly, Honda is not stupid, if Honda can use the same simple ignition component in more then one product line they will, why on earth would they make a spark unit model specific?